R: All Ranks Gather Objects from Every Rank

allgather-method {pbdMPI}

R Documentation

All Ranks Gather Objects from Every Rank

Description

This method lets all ranks gather objects from every rank in the same communicator. The default return is a list of length equal to comm.size(comm).

Usage

allgather(x, x.buffer = NULL, x.count = NULL, displs = NULL,
          comm = .pbd_env$SPMD.CT$comm,
          unlist = .pbd_env$SPMD.CT$unlist)

Arguments

`x`	an object to be gathered from all ranks.
`x.buffer`	a buffer to hold the return object which probably has 'size of `x`' times '`comm.size(comm)`' with the same type of `x`.
`x.count`	a vector of length ‘comm size’ containing all object lengths.
`displs`	`c(0L, cumsum(x.count))` by default.
`comm`	a communicator number.
`unlist`	if unlist the return.

Details

All x on all ranks are likely presumed to have the same size and type.

x.buffer, x.count, and displs can be NULL or unspecified. If specified, the type should be one of integer, double, or raw specified correctly according to the type of x.

If x.count is specified, then the spmd.allgatherv.*() is called.

Value

A list of length comm.size(comm) is returned by default.

Methods

For calling spmd.allgather.*():

signature(x = "ANY", x.buffer = "missing", x.count = "missing")
signature(x = "integer", x.buffer = "integer", x.count = "missing")
signature(x = "numeric", x.buffer = "numeric", x.count = "missing")
signature(x = "raw", x.buffer = "raw", x.count = "missing")

For calling spmd.allgatherv.*:

signature(x = "ANY", x.buffer = "missing", x.count = "integer")
signature(x = "ANY", x.buffer = "ANY", x.count = "integer")
signature(x = "integer", x.buffer = "integer", x.count = "integer")
signature(x = "numeric", x.buffer = "numeric", x.count = "integer")
signature(x = "raw", x.buffer = "raw", x.count = "integer")

Author(s)

Wei-Chen Chen wccsnow@gmail.com, George Ostrouchov, Drew Schmidt, Pragneshkumar Patel, and Hao Yu.

References

Programming with Big Data in R Website: http://r-pbd.org/

Examples

## Not run: 
### Save code in a file "demo.r" and run with 2 processors by
### SHELL> mpiexec -np 2 Rscript demo.r

### Initial.
suppressMessages(library(pbdMPI, quietly = TRUE))
init()
.comm.size <- comm.size()
.comm.rank <- comm.rank()

### Examples.
N <- 5
x <- (1:N) + N * .comm.rank
y <- allgather(matrix(x, nrow = 1))
comm.print(y)
y <- allgather(x, double(N * .comm.size))
comm.print(y)

### Finish.
finalize()

## End(Not run)

[Package pbdMPI version 0.3-1 Index]